All I have loaded is the modpack.

Failed to load mods: all-the-overhaul-modpack/_prototypes/technology.lua:240: attempt to index field 'mini-tech-tree' (a nil value)
stack traceback:
all-the-overhaul-modpack/_prototypes/technology.lua:240: in main chunk
[C]: in function 'require'
all-the-overhaul-modpack/_data-final-fixes.lua:8: in main chunk
[C]: in function 'require'
all-the-overhaul-modpack/data-final-fixes.lua:3: in main chunk

You probably already saw this, but for the benefit of anyone else:

ATOM is not compatible with mini-machines versions later than 9.3.27. And mini-micro-settings should probably just be removed/disabled entirely, but if you don't do that you'll have to roll it back too.

ATOM now has a version limit defined for the mini machines mod. Please update ATOM and downgrade mini machines to meet the requirements.

I downgrade so many times and nothing... its irritating while you have huge progress and after update this f***ing modpack not working :/

Make sure you have mini-machines lower than 9.4.0 (9.3.28 is the latest you can use) and mini-micro-settings is disabled. ATOM should be at 2.2.5. Check that in the ingame mod manager that you can access from the error message. If there is still an error, it's probably a different one and you should provide that to us as well.

Next problem - after "fighting" with this problem - plenty recipes disappeared and when I looked on the rare metals - cant mine - even I cant see technology to discover to start mining again, WTF?

Please move that to a new discussion thread.