You cannot use a filtered chest and an assembly machine on the same parameter like you can with vanilla or most other mods items. For a bot mall this makes it quite difficult.
This is caused by doing el_burner_recipe, el_burner_entity, and el_burner_item instead of having them all named el_burner.
I have tested it out and renaming a few of them works in fixing this issue and removed the annoying duplicate entries in the factoriopedia. I dont know how this works on the whole for the mod as of yet
If this change is implemented migration will be needed else like me you will suddenly lose all of your 248k items and entities killing thy base.
Thanks