The entities from this mod likely need to be excluded due to their script functionality:
https://mods.factorio.com/mod/OmegaDrill
(omega-drill, tomega-drill)

(PS: I took a look at the control.lua code of the OmegaDrill mod. Making it compatible with its quality module's control.lua is relatively straightforward, but you'll need to add an entity named "Omega Drill Internal Storage" in your own mod, with a different name than OmegaDrill's container.)

When used with this mod:
https://mods.factorio.com/mod/UndergroundsPlus
You'll need to modify this mod's script to increase the maximum distance limit to ​255​ - otherwise the game throws errors (since UndergroundsPlus already has a 255-distance pipe entity).