The Lignumis Agricultural Tower is incompatible with Alien Biomes as the Grass and Dirt Tiles have a different name. This means once you escaped to Nauvis, trees can't be planted (does not affect the Lignumis planet)
It could fix this by applying the same code as found in this git repository to data-fina-fixes.lua
I added the information in the description that Alien Biomes is oficially incompatable due to this bug. It's not something that this mod can/should fix. I would mark it as incompatible if there were no people playing with it anyway. It would break their game.