This seems like bobs mod is doing something strange - I could theoretically blacklist the Cerys reactor or manually reset next_upgrade for this special case, but I think it would be better to report this in the Bobs mods discussion.
Either they set next_upgrade of the vanilla reactor before Cerys copies it as a bluepring for the mixed-oxide-reactor (which could be fixed by moving that change to data-updates or data-final-fixes), or they are changing next_upgrade for all reactor entities without looking at fast_replacable_group...