Ahh, that is very unfortunate timing. I was in the middle of a major update for this mod, which does fix the issue referenced above, but may also introduce breaking changes to ongoing saves.
(the issue is due to some recent reshuffling code I made in copy-final-fixes to fix the fast_replaceable_group exploit, but only occurs with Extended Vanilla, Krastorio 2, or other mods that change the electric furnace to an assembling machine type entity, which I neglected to test with before release the least minor version)
I'll try to release a minor version patch for that bug tomorrow, in case updating to the latest major version breaks something else for you (I tested a bit with other mods, including my own personal save, but did not extensively test with all previous options)