It's the sort of thing that's completely dependent on playstyle - I never use the toolbelt hotkeys, if I'm building by hand I do almost all item selection using Q so it's quite jarring when it doesn't work on waterways.
On the other hand, I very rarely need to select waterway items - I can select it once, place a few thousand, then not have to worry about it for days. So I'd call it nice to have but not a big deal.