oh, sorry, I didn't notice you responded.
no ghost, no timeout, it just suddenly wasn't there.
I had a few other mods, mostly Lignumis, Cerys and Maraxsis,
I stopped using this mod because it's very hard to test for this bug, it was mostly happening in long games.
I would go off to another planet, and obsess over my Aquilo base for a while, and return, and.. entrance to the Nauvis subsurface was gone.
the only clue I had, they would vanish in the order I placed them, like they were on a 50-100h timer, or something,
like when I noticed the Nauvis subsurface 1 entrance went missing, I re made it, tested everything was back, and, the subsurface 2 entrance vanished
I dug it immediately, only for the subsurface 3 entrance to vanish.
oh, and nothing vanished while I was looking at it, I expected my subsurface 3 entrance to vanish, so I was camping it.
But it didn't, so then when I moved my attention somewhere else, and came back 10 minutes later, and THEN it just wasn't there, like it had never been there in the first place.