My first impression is AAI Programmable Vehicles being the cause, as it has undocumented (but notoriously well-known) building prevention control script.
But then I read your post on Rampant, where you claimed it is 100% sure it is the cause.  As I do not use neither of the two mods, I believe in your judgement.
This mod merely creates the dummy land mines.  There is nothing I can do on my side, if the other mods choose to destroy/prevent that.
The Rampant control.lua (and all the files it called...) code is extremely long.  I do not have the time to analyse how Rampant really works.
By just brief glance, for line 1332 registering:
script.on_event(defines.events.on_land_mine_armed, onEntitySpawned)
calling function in line 994-1029.  I "suspect" line 1023 or 1025 could be accidentally destroying land mines not of Rampant mod:
entity.destroy()
I am not sure how about all those conditions and how those two lines work, so better ask Veden on that.