I was struggling with the same issue where my chemical plants constantly came to a halt. That even happened for my "iron" and "copper" dredges. After a lot of puzzling I managed to add a buffer chest for the nodules from one of the chemical plants. When one of the chem plants is always free of its own excess nodules, the others always have space to drop theirs into each other. The buffer chest gets priority over the inserter taking nodules from the pump. Simple solution, but the challenge was to make it all fit!
I could only fit 2 chemical plants on the Cobalt dredge though, but I think that's normal because of the extra ore. It has the same buffer chest principle going on, so it never backs up either.
A similar situation kept occurring for the battery discharger, where I would find my dredges powerless, and the container-unpacker for the batteries always stuck at a certain percentage. Not sure how that kept happening but I managed to solve that with the same solution as for the chemical plants, by inserting a buffer chest for a certain amount of batteries, enough to guarantee power for quite a while. Again, the main problem was to make it all fit, especially after adding the nodules-chest, but to my own surprise it worked out.
I will return for screenshots, and some blueprints if we can post them here. Hopefully that can help some folks, because frankly, those dredges were a huge pain the butt and constantly having to reboot them almost made me give up on the whole lot. :)