Hm, that's pretty weird. I'd have to see what other mods you added, but it could be some unexpected mod affecting assembling machines or technologies.
I would check to see if the machines themselves have been loaded, even if their technologies haven't been. You can check this by middle-clicking an empty icon on the hotbar. This should open the item menu, displaying all items that can exist in your inventory (even if they haven't been or can't be researched).
If higher tier mini machines exist here, it would mean that it's specifically the technologies that haven't been loaded properly. This could be because another mod is affecting the technologies or redefining the machines themselves.
If higher tier machines don't exist in the item menu, that that means the logic I use in the creation of the machines is broken. This is most certainly caused by a mod similar to bobs mods or FXP (adding higher tier machines) that isn't supported by this mod. I have to add the functionality on a per mod basis in order to make it work with other mods (not listed in the description)