Re: the unminable connector
This looks like a failed upgrade, probably related to Construction Drones. The aboveground half is a yellow belt, but the underground half is a gray (Bob's basic) belt. I can add something to the next version to remove broken half-and-half connectors like this one.
Re: deconstruction picking up unintended underground belts
I'm still not able to get a deconstruction planner configured with item-on-ground to do anything unexpected, even with your gfycat.
https://gfycat.com/idolizedrecentamericanbulldog
There must be something you're doing that I'm not doing that isn't revealed by the video. How are you creating the deconstruction planner? Keyboard shortcut? Clicking the shortcut bar? Blueprint library? How are you configuring it?