In "Factorissimo2 - notnotmelon fork 🍴" mod it uses hidden poles to connect factories, sometime zipline uses those invisible cables to transfer the player.
I think I will be better if you ignore them.
Also, the better way is to add a hidden string field to settings, so other mods and add their invisible pole entities to this comma separated list.
Meta code from custom mod:
mods.settings["zipline_ignored_entities"] = ( mods.settings["zipline_ignored_entities"] or "" ) .. ",my-super-hidden-pole"
PS. split by comma, trim entity names, and ignore empty strings in names.