Recipe Tweaker is supposed to keep track of what recipes you've made changes to and have them show up in the gui automatically, that way you can add to the changes over the course of multiple relaunches. This removes the need to import changes into the gui completely, but from what it sounds like it's not happening for you.
I have no idea why it wouldn't, but I do know that there's a command for reloading technology effects, like recipe unlocks:
/c game.player.force.reset_technology_effects()
I've never heard of anyone having that issue before, and I haven't been able to replicate it so I don't even know how to start trying to fix it, the code for that part is quite simple and I don't see how it could go wrong. Sorry you're having a problem with it! Are you doing anything besides making a tweak, copying the string, pasting in startup settings, pressing confirm and waiting for reload, then going in game? Those should be the only things you have to do.