Yep, can confirm it is the current version of Fluid Permutations Fixed, and using the standard Chemical Plant as you have pictured.
I went back and enabled only the relevant mods and, like for you, the bug was not present and productivity modules worked.
Going through my mod list one-by-one, I found that the bug appeared after enabling any one of the following:
- Brass Tacks by Planetfall
- BZ Foundry
- BZ Lead
- BZ Graphite & Diamonds
- BZ Manganese
- BZ Noble Metals
- BZ Tin
- BZ Tungsten
Only one of those needs to be enabled for the bug to appear. The other mods from Brevven and Planetfall do not cause issue (Titanium, Zirconium, Them Thar Hills, Lasing Around, etc.). Let me know if any other info might help.