There is a PullRequest on the GitHub with a fix for this
https://github.com/modded-factorio/bobsmods/pull/638/files
If you have something like NotePad++ or VisuaStudio, you can update the .LUA file with the following changes
Line 119
"data.raw.projectile["bob-shotgun-explosive-projectile"].action.action_delivery.target_effects[2].action.force ="
Change it to
"data.raw.projectile["bob-shotgun-explosive-projectile"].action.action_delivery.target_effects[1].action.force ="
Line 125
"data.raw.projectile["bob-shotgun-plasma-projectile"].action.action_delivery.target_effects[1].action.force ="
Change it to
"data.raw.projectile["bob-shotgun-plasma-projectile"].action.action_delivery.target_effects[1].action[1].force ="
I was able to get to main menu and didn't have the warning popup after implementing the fix outlined in the GitHub PullRequest above