I am now running version 0.2.13 on a moderately-sized mod list. Upon further investigation, hovering over ghost tiles revealed that they're affected by a few of the planet mods I've tossed in. So I toggled various planet mods, and was able to reproduce the bug with just the Cerys mod toggled.
This bug can be reproduced with Cerys, its dependent mods, and Blueprint Shotgun enabled. This was tested on the latest version of these mods as of writing. (It lists the Blueprint Manipulation Library as a dependency, although with this dependency by itself, the bug does not happen.)
Here's a link to the mod: https://mods.factorio.com/mod/Cerys-Moon-of-Fulgora