I wasn't able to reproduce this. I sent a blue chip signal to the electromagnetic plant and it selected the standard recipe. The voidcraft recipe can't even be made in an electromagnetic plant, unless some other mod is changing that.
Unless you're talking about exalted voidtronic adaptation, which turns voidtronics into blue chips, but that's a separate recipe, and it isn't even available as a signal. It probably should be, so I will fix this bug! But I'm not sure what is going wrong for you here.