Actually nevermind on the old error, after disabling all mods except yours I saw an error and assumed it was the same error.
But in reality I am getting this error:
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Failed to load mods: Error in assignID: item with name 'carbon' does not exist.
Source: runestone (recipe).
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Its important to note that I am on 2.0 not 2.1
My AI is saying this: runestone-common.lua in 0.8.4 puts carbon in the runestone recipe unconditionally, and carbon is a Space Age item.