Yeah, I'm kind of stuck. This mod supports Realistic Ores, but Automatic Train and Station Painter doesn't.
So I either have to forgo the nice feature of painting the station as well and not having to do this manually, or having mismatched colors on the ores effected by Realistic Ores. =/
I put in a request for ATaSP to add support for Realistic Ores, but we'll see.