I currently have upgraded all iron pipes ("MK1") to "Pipe MK2" which comes from the FE+-Transport mod. If your mod marks an uranium driller for destruction it replaces it with iron pipes (MK1) and not MK2. These pipes are no longer available in my logistic network as I have upgraded them all to MK2. Can you please add some compatibility to FE+-Transport's MK2 pipes?
Maybe there are more mods that have alternative (bigger=higher capacity) pipes, too.
Version 0.3.1 adds a runtime map setting for what pipe to use. Once you have steel pipes, you can change the setting so all future miners use the mk2. It's not a shiny GUI or anything, but should do what you want.