I've noticed with the current version that if I have two miners feeding a chest, and one of the miners runs out, the chest is deconstructed as well. I'm not sure when this behavior started happening but I've been using logistic mining operations for years and the mod previously worked correctly in this situation.

Same issues for me. I need to disable chest remove. How can do this.

This was fixed a while ago. The chest deconstruction logic checks for anything else that might be feeding it before marking it for deconstruction.