Umm, little misunderstading. The normal-underwater pipes are only connectable with each other, but no longer with other types of pipes, so now players can't just build underwater first, then add landfill at the sides to connect the underwater to normal ones.
The intended way is to use the underground-underwater pipe, which is allowed to connect to the normal underground pipe. Sooo, what u could do is add a normal underground(from the miners/pumps), and start waving using the underwater ones.
Before this last update, there were some scripts in control.lua which prevented to build underwater near the coast, so players needed to use the underground pipes to connect the underwater ones...
(it's too much "underwater", i just barely can follow my own words)