With the legendary rocket as the win condition, it was surprisingly easy, trivial even, to go from common scrap to legendary scrap with just two recyclers filled with quality 3 modules. Since legendary scrap recycles into legendary items and vice versa, as soon as you have a couple pieces of legendary scrap, quality is completely out of the picture. (Just drain and restart the existing setup)
Now, I'm not sure what you can realistically do about that to actually make it a challenge (and not just delay the process through forcing the player to scale), but dropping quality modules' quality percentage may be a good start.
If you want to rain hell on your players, quality scrap could also have a chance to recycle into lower quality items, but that feels a bit too intense for how chill the rest of this mod is.