Seconded, this just happened to me for a second time after adding another, totally unrelated mod to the server (in this case being ModuleInsertersSimplified).
I definitely think this is a bug, and quite a major one - hinting at a faulty or improperly stored configuration for the miniloaders.
I'm thinking of deeming their split lane configuration to be too unreliable to really use, which is quite a shame as it's a really helpful feature!
One thing however. This has been a known, major bug for a while now - I think it is highly important to warn people of it, because by now a large portion of the factory I'm running moderately relies on split lanes and is now breaking all over the place, simply because no disclosure was made.
If it's a broken feature, why not lock the UI or add a warning?
I just checked, and it's not listed under "known issues"