The only reason it's the most downloaded mod is because it was a hard requirement for v1.1 Space Exploration
There are basically no popular mods (above 1k downloads) for Factorio 2.0 that requires Alien Biomes directly (excluding modpacks, and these two overhaul-adjacent mods: Realistic Starry Universe and Warp Drive Machine
Ideally, the individual planet mods should mark themselves as incompatible with Alien Biomes, if they are; it shouldn't necessarily be up to me (because what happens when/if they update and things become compatible? I'd have to play catch-up, constantly ensuring they are still incompatible)