Offshore PUMPS apparently outright deletes Bob's groundwater rather than just deleting its autoplace config (the thing that tells Factorio how to spawn it) like it should. My code then tried to restore the autoplace to the missing resource, which crashed. For now I'm not going to try to work around that to fully restore the groundwater, this is an edge case that I'm not that worried about, but I did fix it so it at least will load safely. If you (or someone else reading this) wants me to try to preserve entire resources like that let me know.
Also it breaks omnimatter too, though I didn't put any effort into figuring out exactly why on that one. Granted I have no idea why you'd attempt that combination normally, but theoretically with GUFT it SHOULD work since it'll let you mix omnimatter and not-omnimatter in whatever combination, so one of those two mods would need to fix that, but it's arguable that either one is wrong so I wouldn't hold my breath.
I also figured out that disabling omnimatter ores without it installed broke it so I fixed that too. The rest look okay.
I'll have a .11 uploaded in a few minutes, probably by the time you read this. If I missed something or you find anything else, let me know.