Yeah I asked the dev of that mod to fix it but it hasn't been updated in 2 months and is buggy in places (if you remove a pipe by hand the whole thing flushes, removing all the fluid) but one of my friends needs it on our world meaning I can't remove it.
I wish I could, it feels bad.
Right now my sollution is kinda scrappy, with a bunch of inserters removing the xenomass from my main belts and then a blueprint deployer that clears the whole ship off of xenomass