I'm not sure which mod the issue is stemming from, but I was able to reduce it down to a base set of mods that causes the error, and actually as I removed some mods, I was able to even remove my mod (whistle stop) and still get the error. So here is the smallest list of mods I found that cause the error:
base
aai-industry
boblibrary
bobplate
Deadlock-AAII-bridge
deadlock-beltboxes-loaders
deadlock-integrations
DeadlockCrating
rso-mod
And here is the error:
Failed to load mods: The given sprite rectangle (left_top=0x0, right_bottom=64x64) is outside the actual sprite size (left_top=0x0, right_bottom=32x32).
Sprite name: __bobplates__/graphics/icons/glass.png.
If this is being used as an icon you may need to define the icon_size property.: __bobplates__/graphics/icons/glass.png
Mods to be disabled:
• aai-industry
• bobplates
• Deadlock-AAII-bridge
It probably stems from whichever mod first decides that glass is a 64 size icon instead of what it really is, just a 32 size icon. Somewhere this becomes a thing:
icon = "__bobplates__/graphics/icons/glass.png",
icon_size = 64,
scale = 0.35
},