Same issue, same experience as Intrebute - especially with Blueprint Sandboxes (https://mods.factorio.com/mod/blueprint-sandboxes), the /editor mode, and the lab, etc - getting to "my inventory" is often a many-click adventure.
(I'm also (probably overly-)concerned about moving blueprints out of my global blueprint library and into this save-file's inventory; if I forget to move them back, or the game crashes, I no longer have a backup of my work, heh.)
Edit 1: Okay, got fed up and tracked down a fix myself! Here's the PR, and as far as I can tell, you can now update blueprints in either of the shelves - from both packed and unpacked circuits: https://github.com/Telkine2018/compaktcircuit/pull/59
Lemme know if you try it and see any errors, it's a feature I kinda can't live without.