The AQL module is crashing and I am getting an error message that says to please blacklist any module with MUPGRADE. I have no idea which module yours is clashing with.

Hi! Do you have a crash log?
And did you change any of the default startup settings? If so, try setting them to default values until I can investigate. At default values AQL /shouldn't/' touch any startup data that other mods might use.
Please if you have a crash log I'd like to take a look.
Thanks!

The last few lines are,

379.690 Checksum for script informatron/control.lua: 2950852081
379.693 Checksum for script jetpack/control.lua: 3159744389
379.994 Error AppManagerStates.cpp:1662: machine-upgrades/script/module-counter.lua:15: This module prototype has multiple effects! Someone else messed with this module: mupgrade-module-quality.
Effects = {}.

Mods that are causing the crash: {"auto-quality-logistics"}

Please let that mod's creator know: "Please blacklist any modules with 'mupgrade' in the name to avoid the crash."

stack traceback:
[C]: in function 'assert'
machine-upgrades/script/module-counter.lua:15: in main chunk
[C]: in function 'require'
machine-upgrades/script/technology-linker.lua:3: in main chunk
[C]: in function 'require'
machine-upgrades/control.lua:6: in main chunk

Thanks a lot for the bug report, and thanks for getting back to me with some details. I really appreciate it.

I think I fixed it.