After a lot of troubleshooting, I've decided to revert to 1.1.14 and fix things slowly from there. I just uploaded 1.1.19 which is just 1.1.14 with a few bugfixes to make it functional. This appears to have fixed the reported issues in the test games I've tried it on (I tried it on this savegame and it was working).
You are awesome not giving up. Thank you!
Let me know if you still have trouble after updating
I'll definitely will report the performace.
P.S. Normal69 -- The loader chests already have this function; To the right of the chest GUI for loader chests there is a spot to input custom item filters as a blacklist or whitelist depending on preference. If you need help using this feature feel free to shoot any questions my way
Indeed I wasn't exact - I've meant with the filter why would we stop at mere ammo and fuel? :D
When my playthru reaches that level, I'll report if it fills capsule towers and ballistic missiles too.