kaltenp, if you do have bobs logistics installed, you can avoid this issue by changing "filter-inserter" to "yellow-filter-inserter" on line 20 of src/prototypes/recipe.lua. If you know how to do that, great, otherwise you're somewhat stuck waiting for them to get back to you.
Also, use this at your own risk. I'm a software developer myself, but I've never written in Lua, and I've never done a Factorio mod. I only figured this out by looking at a few other bobs-compatible mods for a quick hack. If this makes your computer explode (or just corrupts your save), sorry, but it's on you. Back up your save. That said, this seems like a fairly safe change IMO.