Hello there,
cargo bay inserters uses a somewhat finicky system using composite entities (the cargo bay contains a smaller entity that serves as proxy inventory) so compatibility would have to come from their side, please ask their dev.
Cargo Bay Limit does not currently have compatibility (you can freely place custom cargo bays and they do not count towards the limit) buuuut, I know the dev, N0iZE and I just pushed a compat patch he asked me for on a different mod so I'll ask him.
Thank you for the feedback!