Until there is a proper solution - here is something that I think will work (don't really know LUA or did any Factorio scripting)
Find the mod folder on your system
open the zip (if you can edit it without unpacking, bonus points)
Find file 'script/repair_turret.lua/'
Search for 'local on_tick = function(event)'
Convert
'''
check_ghost_check_queue()
check_deconstruction_check_queue()
'''
to
'''
-- check_ghost_check_queue()
-- check_deconstruction_check_queue()
'''
Maybe Klonan can suggest a better solution, as I really got no idea what I am doing. This seems to not add any NEW items (so anything already in the process of being added will continue to be built/deconstructed) to build/deconstruct queue but will still repair stuff.