This MOD is not compatible with the 'Bob's Enemies' MOD
Is there a way to solve it?

Specify what the incompatibility is
If the game gives an error, I need its text.
If anything else, describe it

I believe the issue is that bobs mods now names alien artifacts bob-alien-artifact, etc.

I updated my biterutils.lua to fix the error that was occurring but I believe it was could not find small-alien-artifact

I guess now I know what to look for. Thanks.

Apologies for bump, but confirming that small-alien-artifact seems to be the issue judging from the error logs I'm getting. Best of luck bug hunting (in both the fun sense, and the less fun technical sense.)