Players who have points invested in Running and Crafting skills will have the bonuses persist even after an admin has performed the {reset-points} command.
Here's what's officially observed:
Health - Persists after reset
Armor - Persists after reset
Damage - Persists after reset
Critical - Resets successfully
Running - Persists after reset
Crafting - Persists after reset
Mining - Did not test
Inventory - Did not test
Trash - Did not test
Robots - Did not test
Reach - Persists after reset