I guess it could. I thought alot about this and I could change my mind. I guess the ideal option would be if bottleneck could be toggled on and off. So making it optional could be a good idea.
Have you played with the mod yet ? The main feature of this mod is the loop turbine, which recipes generally produce one of the input ingredients. The idea behind this is to create a type of gameplay where tweaking the production and consumption of many fluids is more important. Doing this with bottleneck makes it like ten more fun in my opinion.
If you have some feedback on this I'd be happy to read it !