I've been playing with 004 version with the same bunch of mods for weeks. I have experienced the problems others have reported like heli not rotating. I've also found that on loading the game I can get in the heli, but it won't take off. putting it back into inventory and then placing it again fixes this. Today I loaded the game and immediately got an error from the mod which prevented me from playing until I removed it from the load list. My game then loads OK. I then found the new 005 version, so I loaded that and tried again, but with the result shown above.
Mods I'm using are Adjustable Inventory Size, Aircraft, Automatic Train Painter, Bottleneck, Bulk Rail Loader, Bullet Trails, Clean Floor, Clean Concrete, Factorio Library, FARL, Island Start, Loader Redux, LTN, Mining Drones, optera's Library, Quick Search Item, Rai's Lua Library, Repair Turret, Rich Text Helper, Robot Battery Research, Squeak Through.
As I said before I have been using these for a while now and have not recently added any others.
I'll try disabling some and see if I can narrow things down a bit.