The mod Warptorio2 (1.3.1) caused a non-recoverable error.
Please report this error to the mod author.

Error while running event warptorio2::on_tick (ID 0)
The mod EquipmentGridLogisticModule (1.0.0) caused a non-recoverable error.
Please report this error to the mod author.

Error while running event EquipmentGridLogisticModule::script_raised_destroy (ID 78)
LuaEntity API call when LuaEntity was invalid.
stack traceback:
    __EquipmentGridLogisticModule__/control.lua:133: in function 'vehiclePackup'
    __EquipmentGridLogisticModule__/control.lua:164: in function 'vehicleUnregister'
    __EquipmentGridLogisticModule__/control.lua:428: in function <__EquipmentGridLogisticModule__/control.lua:423>
stack traceback:
    [C]: in function '__index'
    __EquipmentGridLogisticModule__/control.lua:133: in function 'vehiclePackup'
    __EquipmentGridLogisticModule__/control.lua:164: in function 'vehicleUnregister'
    __EquipmentGridLogisticModule__/control.lua:428: in function <__EquipmentGridLogisticModule__/control.lua:423>
stack traceback:
    __warptorio2__/control_main.lua:977: in function 'Warp'
    __warptorio2__/control_main.lua:822: in function 'Warpout'
    __warptorio2__/control_main_helpers.lua:227: in function 'b'
    __warptorio2__/lib/lib_control.lua:281: in function <__warptorio2__/lib/lib_control.lua:281>
stack traceback:
    [C]: in function 'destroy'
    __warptorio2__/control_main.lua:977: in function 'Warp'
    __warptorio2__/control_main.lua:822: in function 'Warpout'
    __warptorio2__/control_main_helpers.lua:227: in function 'b'
    __warptorio2__/lib/lib_control.lua:281: in function <__warptorio2__/lib/lib_control.lua:281>

bug report against other mod

What action were you performing at the time that this crashed ?

Warping to a new planet ?

Added more checks for valid entities

Yep, warping to a new planet, as you guessed.

Make sure you have your entity clone event hooked.