OK, I've taken a look at it, and I think I got a solution. I've added an optional dependency for the Bob stacking mod, to prevent duplicate glass cratihg recipes, but with that one it actually run even without any intervention on my part (batting said duplicate recipe).
For now, use the Bob stacking mod if you use my mod to prevent crashing.
I don't know how to prevent it from crashing without it atm.
Dependency update will be up within 12 hours.