Hello,
I outlined here how you can change the capsules it throws ("consumes") and bots it deploys:
https://mods.factorio.com/mod/Auto_Deploy_Destroyers/discussion/673509c12c18d10d9b02763e
If you can tell me which modded bots you would like to throw, i can take a look how those are technically named in the backend.
Those values should be entered in the settings.
Specifically the name of the item (capsules) and name of the entity (bot).
I can think about adding another armor equipment for "Modded bots", with perhaps a nice in-game menu item to select the relevant capsules.
But if they are significantly stronger for example, my deploy rate calculation might also need tweaking.
Will put it on the backlog for when i have time.