Zen seeding, is an amount of extra seeds, for each tree, they are only different in visuals after planting, so it is more of a cosmetic extra.
All recipes use basic tree-seed if disabled, and K2 should have it's own tree variation recipes to replace them.
Zen-tree (planting box versions) will be still available.
You will have full functionality, and in case, you want your trees to look different when planted from basic seed, you can enable mod: diversitree