I am using Warptorio Expanded, but I think the issue was a combination of the tree bug in Warptorio plus an odd combination of circumstances.
See... before this I was playing Nullius. Apparently, it had set all vegetation to "Disabled" in Alien Biomes' settings, and that carried over to this. So Nauvis-likes weren't getting trees because of the bug, and then alien worlds weren't getting trees because it was being told not to generate them. xD
Not something you need to fix, of course.