Can you let me know what mods you have installed? This doesn't happen with just the mod on its own for some reason. It should be compatible with other mods as much as possible, so this is still a bug, I just need to figure out what other mods are interacting badly.
If you have tons of mods, just let me know which ones might touch the "upgrade lines". Essentially, assembling machines have a next_upgrade property that tells the game that assembling machine 1's are upgraded to assembling machine 2's. Anything that adds to or modifies this next_upgrade may be interacting badly with the mod.
Until then, you can open the mod in an otherwise vanilla configuration, disable the "Preserve upgrade lines" setting near the top, then restart with your chosen set of mods. This should allow the game to load until I fix this, albeit without one of the new features that was added.