Hi again,
Whoops, nevermind, it looks like I rolled back a change without noticing. I've now actually applied the fix that so planets will appear and be available to travel to.
I noticed a genuine new issue which is that planets which are added with no links to Nauvis (i.e. they would link to Vulcanus/Gleba/Fulgora/Aquilo) would be impossible to navigate to (since with this mod, those planets literally do not exist). I've added a simple migration to map those routes to Vulcanus remnants / Gleba Remnants / Fulgora remnants / Aquilo remnants respectively.
I picked a few planet mods at random - the map looks healthier now https://imgur.com/a/3Rxy5P0
Thanks
Jack
p.s. what I haven't done is balance pass certain planetary remnants for a full transit (vulcanus remnants will probably be brutal) - I'll look another time. In the mean time, good luck!