You can add these items manually to "data-final-fixes.lua". As of the time of this writing, currently, Bob's Tungsten Oxide, Carbon, and Lithium chloride need to be fixed.
Carbon is included as "solid-carbon" and should instead be "carbon".
Lithium Chloride is included as "solid-lithium" and should instead be "lithium-chloride".
Tungsten Oxide is not included, and should be included as "tungsten-oxide."
Anything can be added as a stacking recipe by adding it to that file, as {"(item internal name)", (stacking research tier to unlock [1~5]), (custom icon [true/false])}. For example, {"tungsten-oxide", 3, false} adds tungsten oxide as a stacking recipe when you research Stacking 3 and does not have a custom icon.