The color coded pipes mod only makes color coded versions of the base game pipes, pump, and storage tank. As long as those base items and entities exist, the mod should work. It doesn't currently make color coded versions of other modded pipes, pumps, or storage tanks.
Support for K2 and SE pipes have already been requested, but I have no eta for when/if it will be possible.
The planner should work great with all the Pyanodons fluids though, just make sure to switch to "Perfect Match" mode in mod settings to have it use pipes that perfectly match the fluids (best guess mode currently only works for base game fluids).