I have the same problem in an existing game. In general i have Bob/Angel mods installed.
I see the modules in FNEI but i can't see a recipe. If i start a new game with the same mods, i see the recipe and it looks ok. I also tried to disable all other mods but no luck so far. Any idea?
Can you upload a save file? I should be able to write a little script that will fix it for you.
Any ideas how it got like this? Did the issue start after adding / removing some mod(s) from the existing game? After an update?