It's an interesting idea, but hard to do well. The normal machines might be ingredients for other recipes, including the recipes to make your own Big Factories. You'd have to keep those, or replace the ingredients in other recipes. It'd also make the early game a lot harder, since a mall would be a lot harder to do.
I don't see this feature happening for this mod, but you could pretty easily do it yourself. Just disabling recipes isn't too difficult. Or, if you're just looking for a challenge, just don't build any small factories even though you could.